Juraqulov says the label is simply another name for the Islamic Movement of Uzbekistan (IMU), which has been blamed by Uzbek officials for bombings and other deadly attacks.
Juraqulov said the IMU, which seeks to topple the government of Uzbek President Islam Karimov, poses no major security threat to Tajikistan or Kyrgyzstan.
"[The Islamic Movement of Turkmenstan] is the Islamic Movement of Uzbekistan," Juraqulov said. "Everyone knows that it is in Uzbekistan that [the IMU] wants to create problems. For them, Tajikistan and Kyrgyzstan are just regrouping bases they're trying to reach."
However, Juraqulov added that 23 suspected IMU members are currently wanted by authorities in Tajikistan.
He also said the IMU is believed to have been behind a September 28 attack on supporters of Tajik President Imomali Rakhmonov that left two people wounded.
Uzbek officials have suggested that the IMU changed its name to the Islamic Movement of Turkestan in 2001 and that its leader, Tohir Toldashev, is hiding in Pakistan's western tribal regions.
They say the aim of Toldashev's armed militant group is to overthrow the secular governments of Uzbekistan, Kyrgyzstan, and Tajikistan and replace them with an Islamic state.
(RFE/RL's Tajik Service, with Avesta)